JSD-in-VIatmin.md

@@ -52,35 +52,75 @@ The operation below were also adopted for 100 BH encounters.
 > For VItamin, it makes more sense to calculate the JSD between BBH and BH encounter. It is possible to create reference posteriors with BBH waveforms since we know they exist and are a good approximation of what is actually observed, but we do not have any clear observations of BH encounters. So if we have a set of BBH posteriors to use as reference, then we can compute the JSD with any new BBH observation to test whether it is a BBH or BH encoutner.    
      
 ## 3.1 VItamin JSD calculation       
-Fig 3.1.1  m1 JSD   
+### 3.1.1 test   
+Fig 3.1.1.1  m1 JSD   
 ![m1](uploads/ed4bfde3e2b073bea5fea9ab0799ee7e/m1.png)   
-Fig 3.1.2  m1 JSD distribution     
+Fig 3.1.1.2  m1 JSD distribution     
 ![m1_jsd](uploads/d45c1854bc87bfdfece2bf0316f12e93/m1_jsd.png)    
-Fig 3.1.3  m2 JSD   
+Fig 3.1.1.3  m2 JSD   
 ![m2](uploads/62a0d80864c908bb09e7fbcd575fa07c/m2.png)    
-Fig 3.1.4  m2 JSD distribution     
+Fig 3.1.1.4  m2 JSD distribution     
 ![m2_jsd](uploads/0dd831fe4083a85af20e96e739e7c62c/m2_jsd.png)   
-Fig 3.1.5  distance JSD   
+Fig 3.1.1.5  distance JSD   
 ![d](uploads/65f64ac7fa55bf06f3c2edae5b00087e/d.png)    
-Fig 3.1.6  distance JSD distribution     
+Fig 3.1.1.6  distance JSD distribution     
 ![d_jsd](uploads/7da57b16762157f2cd2a447e76ce6cec/d_jsd.png)   
-Fig 3.1.7  BBH & BH encounter t0 JSD    
+Fig 3.1.1.7  BBH & BH encounter t0 JSD    
 ![jsd_t0](uploads/61236ed49b935e8019e57173ec36a942/jsd_t0.png)    
-Fig 3.1.8  BBH & BH encounter t0 JSD distribution   
+Fig 3.1.1.8  BBH & BH encounter t0 JSD distribution   
 ![pdf_t0](uploads/344c1bb00f3d53aef4526b53d72833fd/pdf_t0.png)    
 
-Fig 3.1.9  BBH t0 JSD distribution   
-![t0_BBH](uploads/5d0a0722aa93a9cfbff7c5b68fe18f06/t0_BBH.png)    
-Fig 3.1.10  BBH & BH encounter m1 t0 JSD distribution   
-![t0_1](uploads/5eb68267f0d6bbc5c7e42b68bca29404/t0_1.png)    
-Fig 3.1.11  BBH & BH encounter m4 t0 JSD distribution   
-![t0_4](uploads/22b3b7dcf7c4aacbb2abc1cb4b204f74/t0_4.png)    
-Fig 3.1.12  BBH & BH encounter m8 t0 JSD distribution   
-![t0_8](uploads/37322e16fc62077749bdfa662501ad07/t0_8.png)    
-Fig 3.1.13  BBH & BH encounter m16 t0 JSD distribution   
-![t0__6](uploads/08a2cc7aef736da40d29945507ed26d5/t0__6.png)   
+### 3.1.2 JSD of t0    
+Fig 3.1.2.1  BBH t0 JSD distribution   
+![t0_BBH](uploads/243bcd87537dec1205c79f2f1d2a3cc1/t0_BBH.png)    
+Fig 3.1.2.2  BBH & BH encounter m1 t0 JSD distribution   
+![t0_1](uploads/b2a9af2352d97e65d681fdb717648d39/t0_1.png)    
+Fig 3.1.2.3  BBH & BH encounter m4 t0 JSD distribution   
+![t0_4](uploads/f489a3dd1c127c0e96d57b5ef9afab3a/t0_4.png)    
+Fig 3.1.2.4  BBH & BH encounter m8 t0 JSD distribution 
+![t0_8](uploads/71a67facc8dd9fb5919bed056e279d4f/t0_8.png)    
+Fig 3.1.2.5  BBH & BH encounter m16 t0 JSD distribution   
+![t0_16](uploads/2ac694ca666ad63bd403348e7a06cf1f/t0_16.png)     
 
+Then, I also calculated JSDs of m1, m2 and distance.   
+### 3.1.3 JSD of m1   
 
+Fig 3.1.3.1  BBH m1 JSD distribution   
+![m1_BBH](uploads/68312797b58b3c7f98aacba2ec90ebd3/m1_BBH.png)    
+Fig 3.1.3.2  BBH & BH encounter m1 m1 JSD distribution   
+![m1_1](uploads/6899836ea6a64ede555704f5d168e37b/m1_1.png)     
+Fig 3.1.3.3  BBH & BH encounter m4 m1 JSD distribution   
+![m1_4](uploads/990b6e9d19440a73bb710377a4f684a6/m1_4.png)     
+Fig 3.1.3.4  BBH & BH encounter m8 m1 JSD distribution 
+![m1_8](uploads/9aec71e59f31e95e1ca5348230f9e3f3/m1_8.png)    
+Fig 3.1.3.5  BBH & BH encounter m16 m1 JSD distribution   
+![m1_16](uploads/dcea63a1af42f417179143f3b5f87e6f/m1_16.png)     
+
+### 3.1.4 JSD of t0    
+
+Fig 3.1.4.1  BBH m2 JSD distribution   
+![m2_BBH](uploads/46e0ac8250aafdb8dcae8dda9426c0e0/m2_BBH.png)    
+Fig 3.1.4.2  BBH & BH encounter m1 m2 JSD distribution   
+![m2_1](uploads/7434cfe42f7af5b0c7f462f7368b3559/m2_1.png)    
+Fig 3.1.4.3  BBH & BH encounter m4 m2 JSD distribution   
+![m2_4](uploads/07032104d40afe7bc0955f85322a7517/m2_4.png)    
+Fig 3.1.4.4  BBH & BH encounter m8 m2 JSD distribution 
+![m2_8](uploads/04d95bfa235a91a0bc1a40597dbdbbe6/m2_8.png)    
+Fig 3.1.4.5  BBH & BH encounter m16 m2 JSD distribution   
+![m2_16](uploads/517c3d4f19611d29271f30ab1bcd16af/m2_16.png)    
+
+### 3.1.5 JSD of distance    
+
+Fig 3.1.5.1  BBH distance JSD distribution   
+![d_BBH](uploads/f4dda23a05e37faeea064468731f881f/d_BBH.png)    
+Fig 3.1.5.2  BBH & BH encounter m1 distance JSD distribution   
+![d_1](uploads/827d132f2b052319ed84fa2ade89bb78/d_1.png)    
+Fig 3.1.5.3  BBH & BH encounter m4 distance JSD distribution   
+![d_4](uploads/6971d07584dabfce50561e785bba76ac/d_4.png)    
+Fig 3.1.5.4  BBH & BH encounter m8 distance JSD distribution 
+![d_8](uploads/395108294cb2af9b922f11011a543c27/d_8.png)    
+Fig 3.1.5.5  BBH & BH encounter m16 distance JSD distribution   
+![d_16](uploads/a48674429d66b45d3115c6389fb92a2d/d_16.png)    
 
 
 ## 3.2 Bilby and VItamin JSD calculation